COMPARATIVE DOCKING STUDY OF ‘DUKUNG ANAK’ PHYTONUTRIENT COMPOUNDS WITH ANTI-CHOLESTEROL PROPERTIES

Authors

  • Lina Rozano Biotechnology Research Centre, Malaysian Agricultural Research and Development Institute (MARDI), 43400 Serdang, Selangor, Malaysia
  • Muhammad Redha Abdullah Zawawi Biotechnology Research Centre, Malaysian Agricultural Research and Development Institute (MARDI), 43400 Serdang, Selangor, Malaysia
  • Muhammad Aizuddin Ahmad Biotechnology Research Centre, Malaysian Agricultural Research and Development Institute (MARDI), 43400 Serdang, Selangor, Malaysia
  • Indu Bala Jaganath Biotechnology Research Centre, Malaysian Agricultural Research and Development Institute (MARDI), 43400 Serdang, Selangor, Malaysia

DOI:

https://doi.org/10.11113/jt.v77.6900

Keywords:

Geraniin, Phyllanthus sp., Docking, 3-hydroxy-3-methyl-glutaryl-CoA reductase, Cardiovascular disease

Abstract

Inhibition of 3-hydroxy-3-methyl-glutaryl-CoA reductase (HMGR) has been a useful strategy in the treatment of cardiovascular disease. Molecular docking study was carried out to study the effects of geraniin and its metabolites on 3-hydroxy-3-methyl-glutaryl-CoA reductase. 3-hydroxy-3-methyl-glutaryl-CoA reductase acts on melavonate pathway for cholesterol production in the liver but high level of cholesterol in the body may lead to cardiovascular disease where low density lipoprotein accumulates and forms atherosclerotic plaque. In clinical treatment, drug statin is used to block 3-hydroxy-3-methyl-glutaryl-CoA reductase function to reduce the risk of cardiovascular disease but there are unwanted effects where drug statin may cause muscle pain and liver damage. Naturally obtained phytonutrient compounds, geraniin and urolithin groups from dukung anak or scientifically known as Phyllanthus sp. were evaluated for 3-hydroxy-3-methyl-glutaryl-CoA reductase inhibitory activity using in silico docking studies. Most of these compounds were found to be potent inhibitors of 3-hydroxy-3-methyl-glutaryl-CoA reductase in comparison with known drugs of cardiovascular disease. The binding energies of urolithin A, urolithin B-glucoronide and urolithin D-glucoronide were compared with that of geraniin and it was found that these phytonutrient compounds may have more potent inhibition of 3-hydroxy-3-methyl-glutaryl-CoA reductase comparable with the current drug for cardiovascular disease.

References

M. Slavich, J. C. Kaski. 2014. Atherosclerotic Heart Disease. Metabolism of Human Diseases. Springer Vienna. 243-249

D. F. J. Ketelhuth, G. K. Hansson. 2011. Cellular Immunity, Low-Density Lipoprotein And Atherosclerosis: Break Of Tolerance In The Artery Wall. Thrombosis and Haemostasis. 106: 779-786.

Y. Jiang, M. Wang, K. Huang, Z. Zhang, N. Shao, Y. Zhang, W. Wang, S. Wang. 2012. Oxidized Low-Density Lipoprotein Induces Secretion Of Interleukin-1β By Macrophages Via Reactive Oxygen Species-Dependent NLRP3 Inflammasome Activation. Biochemical and Biophysical Research Communications. 425(2012): 121-126.

K. J. McLean, M. Hans, A. W. Munro. 2012. Cholesterol, an Essential Molecule: Diverse Roles Involving Cytochrome P450 Enzymes. Biochemical Society Transactions. 40(3): 587.

Y. Song, A. K. Kenworthy, C. R. Sanders. 2013. Cholesterol as a Co-Solvent And A Ligand For Membrane Proteins. Protein Science. 23(1): 1-22.

J. H. Contois, G. R. Warnick, A. D. Sniderman. 2011. Reliability of Low-Density Lipoprotein Cholesterol, Non-High-Density Lipoprotein Cholesterol, And Apolipoprotein B Measurement. Journal of Clinical Lipidoligy. 5(4): 264-272.

M. Natsuaki, Y. Furukawa, T. Morimoto, Y. Nakagawa, K. Ono, S. Kaburagi, T. Inada, H. Mitsuoka, R. Taniguchi, A. Nakano, T. Kita, R. Sakata, T. Kimura. 2012. Intensity of Statin Therapy, Achieved Low-Density Lipoprotein Cholesterol Levels And Cardiovascular Outcomes In Japanese Patients After Coronary Revascularization. Circulation Journal. 76(6): 1369-1379.

C. R. Sirtori. 2014. The Pharmacology Of Statins. Pharmacological Research. 88: 3-11.

S. M. Ma, D. E. Garcia, A. M. Redding-Johanson, G. D. Friedland, R. Chan, T. S. Batth, J. R. Haliburton, D. Chivian, J. D. Keasling, C. J. Petzold, T. S. Lee, S. R. Chhabra. 2011. Optimization of a Heterologous Mevalonate Pathway Through The Use Of Variant HMG-Coa Reductases. Metabolic Engineering. 13(5): 588-597.

D. Rosenbaum, J. Dallongeville, P. Sabouret, E. Bruckert. 2013. Discontinuation of Statin Therapy Due To Muscular Side Effects: A Survey In Real Life. Nutrition, Metabolism and Cardiovascular Diseases. 23(9): 871-875.

E. Bjornsson, E. I. Jacobsen, E. Kalaitzakis. 2012. Hepatotoxicity Associated With Statins: Reports Of Idiosyncratic Liver Injury Post-Marketing. Journal of Hepatology. 56(2): 374-380.

A. A. Carter, T. Gomes, X. Camacho, D. N. Juurlink, B. R. Shah, M. M. Mamdani. 2013. Risk of Incident Diabetes Among Patients Treated With Statins: Population Based Study. Bmj. 346: f2610.

S. Sultan, N. Hynes. 2013. The Ugly Side Of Statins. Systemic Appraisal Of The Contemporary Un-Known Unknowns. Open Journal of Endocrine and Metabolic Diseases. 3(3): 179-185.

D. Mozaffarian, E. J. Benjamin, A. S. Go, D. K. Arnett, M. J. Blaha, M. Cushman, S. D. Ferranti et al. 2015. Heart Disease And Stroke Statistics-2015 Update: A Report From The American Heart Association. Circulation. 131(4): e29.

R. Kuttan, K. B. Harikumar. 2011. Phyllanthus Species: Scientific Evaluation And Medicinal Applications. CRC Press.

W. C. Tan, S. H. Lee, Y. Q. Tang, S. D. Sekaran. 2013. Antiviral Effects Of A Malaysia Medicinal Plant (Phyllanthus). Journal of Health and Translational Medicine. 25.

H. Ito. 2011. Metabolites of the Ellagitannin Geraniin And Their Antioxidant Activities. Plants Medica. 77: 1110-1115.

L. T. Ling, Y. Saito, U. D. Palanisamy, H. M. Cheng, N. Noguchi. 2011. Cytoprotective Effects Of Geraniin Against Peroxynitrite- And Peroxyl Radical-Induced Cell Death Via Free Radical Scavenging Activity. Food Chemistry. 132: 1899-1907.

P. Wang, X. Peng, Z. F. Wei, W. Wang, W. D. Ma, L. P. Yao, Y. J. Fu, Y. G. Zu. 2015. Geraniin Exerts Cytoprotective Effect Against Cellular Oxidative Stress By Upregulation Of Nrf2-Mediated Antioxidant Enzyme Expression Via PI3K/AKT And ERK1/2 Pathway. Biochimica et Biophysica Acta. 1850: 1751-1761.

S. A. Shukor. 2014. Bioavailability And Pharmacokinetic Studies Of Dukung Anak Towards Guaranteeing Effective Herbal Therapy. Buletin Teknologi MARDI. 6: 45-51.

Y. Yang, L. Zhang, X. Fan, C. Qin, J. Liu. 2012. Antiviral effect of geraniin on human enterovirus 71 in vitro and in vivo. Bioorganic and Medicinal Chemistry Letters. 22:2209-2211.

A. P. Y. S. Chung, S. H. Ton, S. Gurtu, U. D. Palanisamy. 2014. Ellagitannin Geraniin Supplementation Ameliorates Metabolic Risks In High-Fat Diet-Induced Obese Sprague Dawley Rats. Journal of Functional Food. 9: 173-182.

A. Perera, S. H. Ton, U. D. Palanisamy. 2015. Perspectives on Geraniin, A Multifunctional Natural Bioactive Compound. Trends in Food Science and Technology. 44: 243-257.

S. J. Bing, D. Ha, M. J. Kim, E. Park, G. Ahn, D. S. Kim, R. K. Ko, J. W. Park, N. H. Lee, Y. Lee. 2013. Geraniin Down Regulates Gamma Radiation-Induced Apoptosis By Suppressing DNA Damage. Food and Chemical Toxicology. 57: 147-153.

A. Vassallo, M. C. Vaccaro, N. D. Tommasi, F. D. Piaz, A. Leone. 2013. Identification of the Plant Compound Geraniin As A Novel Hsp90 Inhibitor. PLos ONE. 8(9): e74266.

M. Y. Kuo, H. C. Ou, W. J. Lee, W. W. Kuo, L. L. Hwang, T. Y. Song, C. Y. Huang, T. H. Chiu, K. L. Tsai, C. S. Tsai, W. H. H. Sheu. 2011. Ellagic acid Inhibits Oxidized Low-Density Lipoprotein (Oxldl)-Induced Metalloproteinase (MMP) Expression By Modulating The Protein Kinase C-Α/Extracellular Signal-Regulated Kinase/Peroxisome Proliferator-Activated Receptor Γ/Nuclear Factor-Κb (PKC-Α/ERK/PPAR-Γ/NF-Κb) Signalling Pathway In Endothelial Cells. Journal of Agricultural and Food Chemistry. 59(9): 5100-5108.

A. Rocejanasaroj, T. Tencomnao, W. Sangkitikomol. 2014. Effect of Phyllanthus amarus Extract On Antioxidant And Lipid Metabolism Gene Expression In Hepg2 Cells. Journal of Chemical and Pharmaceutical Research. 6(11): 176-183.

G. A. Asare, P. Addo, K. Bugyei, B. Gyan, S. Adjei, L. S. O. Nyarko, E. K. Wiredu, A. Nyarko. 2011. Acute Toxicity Studies Of Aqueous Leaf Extract of Phyllanthus niruri. Interdisciplinary Toxicology. 4(4): 206-210.

A. Q. Zhou, C. S. O’hern, L. Regan. 2011. Revisiting the Ramachandran Plot From A New Angle. Protein Science. 20: 1166-1171.

A. Volkamer, D. Kunh, F. Rippmann, M. Rarey. 2012. DoGSiteScorer: A Web Server For Automatic Binding Site Prediction, Analysis And Druggability Assessment. Bioinformatics Applications Note. 28(15): 2074-2075.

H. Wagner. 2011. Synergy Research: Approaching A New Generation Of Phytopharmaceuticals. Fitoterapia. 82: 34-37.

G. M. Cragg, D. J. Newman. 2013. Natural Products: A Continuing Source Of Novel Drug Leads. Biochimica et Biophysica Acta. 1830: 3670-3695.

A. D. Kinghorn, H. B. Chai, C. K. Sung, W. J. Keller. 2011. The Classical Drug Discovery Approach To Defining Bioactive Constituents Of Botanicals. Fitoterapia. 82: 71-79.

J. S. Miller. 2011. The Discovery Of Medicines From Plants: A Current Biological Perspective. Economic Botany. 65(4): 396-407.

X. Y. Meng, X. H. Zhang, M Mezei, M. Cui. 2011. Molecular Docking: A Powerful Approach For Structure-Based Drug Discovery. Current Computer-Aided Drug Design. 7(2): 146-157.

C. A. Lipinski. 2004. Lead- and Drug-Like Compounds: The Rule-Of-Five Revolution. Drug Discovery Today: Technologies. 1(4): 337-341.

J. S. Burg, P. J. Espenshade. 2011. Regulation of HMG-CoA Reductase In Mammals And Yeast. Progress in Lipid Research. 50: 403-410.

Y. Shan, E. T. Kim, M. P. Eastwood, R. O. Dror, M. A. Seeliger, D. E. Shaw. 2011. How Does A Drug Molecule Find Its Target Binding Site? Journal of the American Chemical Society. 133(24): 9181-9183.

Downloads

Published

2015-12-20

Issue

Section

Science and Engineering

How to Cite

COMPARATIVE DOCKING STUDY OF ‘DUKUNG ANAK’ PHYTONUTRIENT COMPOUNDS WITH ANTI-CHOLESTEROL PROPERTIES. (2015). Jurnal Teknologi, 77(31). https://doi.org/10.11113/jt.v77.6900